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1

Use of Proton Pump Inhibitors Increases Risk of Incident Kidney Stones

Simonov, Michael, Abel, Erica E., Skanderson, Melissa, Masoud, Amir, Hauser, Ronald G., Brandt, Cynthia A., Wilson, Francis P., Laine, Loren

Journal:

Clinical Gastroenterology and Hepatology

Year:

2020

File:

PDF, 680 KB

2020

2

Bacterial phylogenetic diversity and a novel candidate division of two humid region, sandy surface soils

Jizhong Zhou, Beicheng Xia, Heshu Huang, David S. Treves, Loren J. Hauser, Richard J. Mural, Anthony V. Palumbo, James M. Tiedje

Journal:

Soil Biology and Biochemistry

Year:

2003

Language:

english

File:

PDF, 284 KB

english, 2003

3

PanFP: pangenome-based functional profiles for microbial communities

Jun, Se-Ran, Robeson, Michael S., Hauser, Loren J., Schadt, Christopher W., Gorin, Andrey A.

Journal:

BMC Research Notes

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

4

Improved genome annotation for Zymomonas mobilis

Yang, Shihui, Pappas, Katherine M, Hauser, Loren J, Land, Miriam L, Chen, Gwo-Liang, Hurst, Gregory B, Pan, Chongle, Kouvelis, Vassili N, Typas, Milton A, Pelletier, Dale A

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 162 KB

english, 2009

5

Insights from 20 years of bacterial genome sequencing

Land, Miriam, Hauser, Loren, Jun, Se-Ran, Nookaew, Intawat, Leuze, Michael R., Ahn, Tae-Hyuk, Karpinets, Tatiana, Lund, Ole, Kora, Guruprased, Wassenaar, Trudy, Poudel, Suresh, Ussery, David W.

Journal:

Functional & Integrative Genomics

Year:

2015

Language:

english

File:

PDF, 1.17 MB

english, 2015

6

Cloning and analysis of the macronuclear gene for histone H1 from Euplotes eurystomus

Hauser, Loren J., Treat, Mary L., Olins, Donald E.

Journal:

Nucleic Acids Research

Year:

1993

Language:

english

File:

PDF, 110 KB

english, 1993

7

Developing measures for microbial genome assembly quality control

Rachel M Adams, Jason B Harris, Jeremy J Jay, Beth G Johnson, Miriam L Land, Loren J Hauser

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 138 KB

english, 2010

8

Complete genome sequence ofGranulicella tundricolatype strain MP5ACTX9T, anAcidobacteriafrom tundra soil

Rawat, Suman R., Männistö, Minna K., Starovoytov, Valentin, Goodwin, Lynne, Nolan, Matt, Hauser, Loren, Land, Miriam, Davenport, Karen Walston, Woyke, Tanja, Häggblom, Max M.

Journal:

Standards in Genomic Sciences

Year:

2014

Language:

english

File:

PDF, 1.85 MB

english, 2014

9

Genomics of an extreme psychrophile,Psychromonas ingrahamii

Monica Riley, James T Staley, Antoine Danchin, Ting Zhang Wang, Thomas S Brettin, Loren J Hauser, Miriam L Land, Linda S Thompson

Journal:

Year:

2008

Language:

english

File:

PDF, 574 KB

english, 2008

10

Comparative genome analysis of Pseudomonas genomes including Populus -associated isolates

Jun, Se-Ran, Wassenaar, Trudy M., Nookaew, Intawat, Hauser, Loren, Wanchai, Visanu, Land, Miriam, Timm, Collin, Lu, Tse-Yuan S., Schadt, Christopher W., Doktycz, Mitchel J., Pelletier, Dale A., Ussery

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 1.44 MB

english, 2015

11

Complete genome sequence ofGranulicella mallensistype strain MP5ACTX8T, an acidobacterium from tundra soil

Rawat, Suman R., Männistö, Minna K., Starovoytov, Valentin, Goodwin, Lynne, Nolan, Matt, Hauser, Loren J., Land, Miriam, Davenport, Karen Walston, Woyke, Tanja, Häggblom, Max M.

Journal:

Standards in Genomic Sciences

Year:

2014

Language:

english

File:

PDF, 1.94 MB

english, 2014

12

Determination and Comparison of the Baseline Proteomes of the Versatile Microbe Rhodopseudomonas p alustris under Its Major Metabolic States

VerBerkmoes, Nathan C., Shah, Manesh B., Lankford, Patricia K., Pelletier, Dale A., Strader, Michael B., Tabb, David L., McDonald, W. Hayes, Barton, John W., Hurst, Gregory B., Hauser, Loren, Davison,

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 225 KB

english, 2006

13

Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris

Larimer, Frank W, Chain, Patrick, Hauser, Loren, Lamerdin, Jane, Malfatti, Stephanie, Do, Long, Land, Miriam L, Pelletier, Dale A, Beatty, J Thomas, Lang, Andrew S

Journal:

Nature Biotechnology

Year:

2003

Language:

english

File:

PDF, 392 KB

english, 2003

14

Integrating “Top-Down” and “Bottom-Up” Mass Spectrometric Approaches for Proteomic Analysis of Shewanella oneidensis

VerBerkmoes, Nathan C., Bundy, Jonathan L., Hauser, Loren, Asano, Keiji G., Razumovskaya, Jane, Larimer, Frank, Hettich, Robert L., Stephenson, James L.

Journal:

Journal of Proteome Research

Year:

2002

Language:

english

File:

PDF, 418 KB

english, 2002

15

Permanent draft genome sequence ofComamonas testosteroniKF-1

Weiss, Michael, Kesberg, Anna I., LaButti, Kurt M., Pitluck, Sam, Bruce, David, Hauser, Loren, Copeland, Alex, Woyke, Tanja, Lowry, Stephen, Lucas, Susan, Land, Miriam, Goodwin, Lynne, Kjelleberg, Sta

Journal:

Standards in Genomic Sciences

Year:

2013

Language:

english

File:

PDF, 1.52 MB

english, 2013

16

Physical Mapping of the Pink-Eyed Dilution Complex in Mouse Chromosome 7 shows that Atp10c is the only Transcript between Gabrb3 and Ube3a

Dhar, Madhu S., Hauser, Loren J., Nicholls, Robert D., Johnson, Dabney K.

Journal:

DNA Sequence - The Journal of Sequencing and Mapping

Year:

2004

Language:

english

File:

PDF, 246 KB

english, 2004

17

Evaluation of “Shotgun” Proteomics for Identification of Biological Threat Agents in Complex Environmental Matrixes: Experimental Simulations

VerBerkmoes, Nathan C., Hervey, W. Judson, Shah, Manesh, Land, Miriam, Hauser, Loren, Larimer, Frank W., Van Berkel, Gary J., Goeringer, Douglas E.

Journal:

Analytical Chemistry

Year:

2005

Language:

english

File:

PDF, 254 KB

english, 2005

18

Dictyostelium discoideum contains a single-copy gene encoding a unique subtype of histone H1

Loren J. Hauser, Madhu S. Dhar, Donald E. Olins

Journal:

Year:

1995

Language:

english

File:

PDF, 464 KB

english, 1995

19

Erratum to: Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park

Brumm, Phillip, Land, Miriam L., Hauser, Loren J., Jeffries, Cynthia D., Chang, Yun-Juan, Mead, David A.

Journal:

Standards in Genomic Sciences

Year:

2016

Language:

english

File:

PDF, 335 KB

english, 2016

20

Global transcriptome analysis ofClostridium thermocellumATCC 27405 during growth on dilute acid pretreatedPopulusand switchgrass

Wilson, Charlotte M, Rodriguez, Miguel, Johnson, Courtney M, Martin, Stanton L, Chu, Tzu, Wolfinger, Russ D, Hauser, Loren J, Land, Miriam L, Klingeman, Dawn M, Syed, Mustafa H, Ragauskas, Arthur J, T

Journal:

Biotechnology for Biofuels

Year:

2013

Language:

english

File:

PDF, 491 KB

english, 2013

21

A novel ATPase on mouse chromosome 7 is a candidate gene for increased body fat

DHAR, MADHU, WEBB, LISA S., SMITH, LAUREL, HAUSER, LOREN, JOHNSON, DABNEY, WEST, DAVID B.

Journal:

Physiological Genomics

Year:

2000

Language:

english

File:

PDF, 245 KB

english, 2000

22

Exploring the symbiotic pangenome of the nitrogen-fixing bacteriumSinorhizobium meliloti

Marco Galardini, Alessio Mengoni, Matteo Brilli, Francesco Pini, Antonella Fioravanti, Susan Lucas, Alla Lapidus, Jan-Fang Cheng, Lynne Goodwin, Samuel Pitluck, Miriam Land, Loren Hauser, Tanja Woyke,

Journal:

Year:

2011

Language:

english

File:

PDF, 3.11 MB

english, 2011

23

Complete Genome Sequence ofGeobacillusstrain Y4.1MC1, a Novel CO-UtilizingGeobacillus thermoglucosidasiusStrain Isolated from Bath Hot Spring in Yellowstone National Park

Brumm, Phillip, Land, Miriam L., Hauser, Loren J., Jeffries, Cynthia D., Chang, Yun-Juan, Mead, David A.

Journal:

BioEnergy Research

Year:

2015

Language:

english

File:

PDF, 346 KB

english, 2015

24

Complete genome sequences ofGeobacillussp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park

Brumm, Phillip, Land, Miriam L., Hauser, Loren J., Jeffries, Cynthia D., Chang, Yun-Juan, Mead, David A.

Journal:

Standards in Genomic Sciences

Year:

2015

Language:

english

File:

PDF, 1.75 MB

english, 2015

25

Environment sensing and response mediated by ABC transporters

Sarah E Giuliani, Ashley M Frank, Danielle M Corgliano, Catherine Seifert, Loren Hauser, Frank R Collart

Journal:

Year:

2011

Language:

english

File:

PDF, 1.41 MB

english, 2011

26

Complete Genome sequence ofBurkholderia phymatumSTM815T, a broad host range and efficient nitrogen-fixing symbiont ofMimosaspecies

Moulin, Lionel, Klonowska, Agnieszka, Caroline, Bournaud, Booth, Kristina, Vriezen, Jan A.C., Melkonian, Rémy, James, Euan K., Young, J. Peter W., Bena, Gilles, Hauser, Loren, Land, Miriam, Kyrpides,

Journal:

Standards in Genomic Sciences

Year:

2014

Language:

english

File:

PDF, 1.81 MB

english, 2014

27

Assessment of genome annotation using gene function similarity within the gene neighborhood

Jun, Se-Ran, Nookaew, Intawat, Hauser, Loren, Gorin, Andrey

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.31 MB

english, 2017

28

Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation

Lisa Y. Stein, Daniel J. Arp, Paul M. Berube, Patrick S. G. Chain, Loren Hauser, Mike S. M. Jetten, Martin G. Klotz, Frank W. Larimer, Jeanette M. Norton, Huub J. M. Op den Camp, Maria Shin, Xueming W

Journal:

Environmental Microbiology

Year:

2007

Language:

english

File:

PDF, 466 KB

english, 2007

29

Replicates, Read Numbers, and Other Important Experimental Design Considerations for Microbial RNA-seq Identified Using Bacillus thuringiensis Datasets

Manga, Punita, Klingeman, Dawn M., Lu, Tse-Yuan S., Mehlhorn, Tonia L., Pelletier, Dale A., Hauser, Loren J., Wilson, Charlotte M., Brown, Steven D.

Journal:

Frontiers in Microbiology

Year:

2016

Language:

english

File:

PDF, 1.85 MB

english, 2016

30

Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation

Rocap, Gabrielle, Larimer, Frank W., Lamerdin, Jane, Malfatti, Stephanie, Chain, Patrick, Ahlgren, Nathan A., Arellano, Andrae, Coleman, Maureen, Hauser, Loren, Hess, Wolfgang R.

Journal:

Year:

2003

Language:

english

File:

PDF, 435 KB

english, 2003

31

A Computational Study of Shewanella oneidensis MR-1: Structural Prediction and Functional Inference of Hypothetical Proteins

Yost, Christal, Hauser, Loren, Larimer, Frank, Thompson, Dorothea, Beliaev, Alexander, Zhou, Jizhong, Xu, Ying, Xu, Dong

Journal:

Omics A Journal of Integrative Biology

Year:

2003

Language:

english

File:

PDF, 786 KB

english, 2003

32

Comparative Metagenomics of Toxic Freshwater Cyanobacteria Bloom Communities on Two Continents

Steffen, Morgan M., Li, Zhou, Effler, T. Chad, Hauser, Loren J., Boyer, Gregory L., Wilhelm, Steven W., Bertilsson, Stefan

Journal:

Year:

2012

Language:

english

File:

PDF, 694 KB

english, 2012

33

Complete genome sequence of the filamentous anoxygenic phototrophic bacteriumChloroflexus aurantiacus

Kuo-Hsiang Tang, Kerrie Barry, Olga Chertkov, Eileen Dalin, Cliff S Han, Loren J Hauser, Barbara M Honchak, Lauren E Karbach, Miriam L Land, Alla Lapidus, Frank W Larimer, Natalia Mikhailova, Samuel P

Journal:

Year:

2011

Language:

english

File:

PDF, 1.38 MB

english, 2011

34

Identifying promoters for gene expression in Clostridium thermocellum

Olson, Daniel G., Maloney, Marybeth, Lanahan, Anthony A., Hon, Shuen, Hauser, Loren J., Lynd, Lee R.

Journal:

Metabolic Engineering Communications

Year:

2015

Language:

english

File:

PDF, 2.08 MB

english, 2015

35

Complete genome sequence ofMethanocorpusculum labreanumtype strain Z

Anderson, Iain J., Sieprawska-Lupa, Magdalena, Goltsman, Eugene, Lapidus, Alla, Copeland, Alex, Glavina Del Rio, Tijana, Tice, Hope, Dalin, Eileen, Barry, Kerrie, Pitluck, Sam, Hauser, Loren, Land, Mi

Journal:

Standards in Genomic Sciences

Year:

2009

Language:

english

File:

PDF, 455 KB

english, 2009

36

Complete Genome Sequence ofClostridium clariflavumDSM 19732

Izquierdo, Javier A., Goodwin, Lynne, Davenport, Karen W., Teshima, Hazuki, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Shunsheng, Land, Miriam, Hauser, Loren, Jeffries, Cynthia D., Han, James,

Journal:

Standards in Genomic Sciences

Year:

2012

Language:

english

File:

PDF, 8.83 MB

english, 2012

37

Complete Genome Sequence of the Complex Carbohydrate-Degrading Marine Bacterium, Saccharophagus degradans Strain 2-40T

Weiner, Ronald M., Taylor, Larry E., Henrissat, Bernard, Hauser, Loren, Land, Miriam, Coutinho, Pedro M., Rancurel, Corinne, Saunders, Elizabeth H., Longmire, Atkinson G., Zhang, Haitao, Bayer, Edward

Journal:

Year:

2008

Language:

english

File:

PDF, 2.19 MB

english, 2008

38

Enigmatic, ultrasmall, uncultivated Archaea

Brett J. Baker, Luis R. Comolli, Gregory J. Dick, Loren J. Hauser, Doug Hyatt, Brian D. Dill, Miriam L. Land, Nathan C. VerBerkmoes, Robert L. Hettich, Jillian F. Banfield and Norman R. Pace

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.62 MB

english, 2010

39

An Aminophospholipid Translocase Associated with Body Fat and Type 2 Diabetes Phenotypes

Madhu Dhar, Loren Hauser, Dr. Dabney Johnson

Journal:

Year:

2002

Language:

english

File:

PDF, 157 KB

english, 2002

40

Non-contiguous finished genome sequence and contextual data of the filamentous soil bacteriumKtedonobacter racemifertype strain (SOSP1-21T)

Chang, Yun-juan, Land, Miriam, Hauser, Loren, Chertkov, Olga, Del Rio, Tijana Glavina, Nolan, Matt, Copeland, Alex, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Han, Cliff, Goodwin, Lynne, Pitluck, Sam,

Journal:

Standards in Genomic Sciences

Year:

2011

Language:

english

File:

PDF, 5.11 MB

english, 2011

41

Iron nutrition and physiological responses to iron stress inNitrosomonas europaea

Xueming Wei, Neeraja Vajrala, Loren Hauser, Luis A. Sayavedra-Soto, Daniel J. Arp

Journal:

Archives of Microbiology

Year:

2006

Language:

english

File:

PDF, 323 KB

english, 2006

42

Fractionation of human H1 subtypes and characterization of a subtype-specific antibody exhibiting non-uniform nuclear staining

Missag H. Parseghian, Robert F. Clark, Loren J. Hauser, Nadja Dvorkin, Debra A. Harris, Barbara A. Hamkalo

Journal:

Chromosome Research

Year:

1993

Language:

english

File:

PDF, 1.39 MB

english, 1993

43

Structure of the macronuclear polyubiquitin gene inEuplotes

Loren J. Hauser, Arthur E. Roberson, Donald E. Olins

Journal:

Year:

1991

Language:

english

File:

PDF, 1.70 MB

english, 1991

44

Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt, Gwo-Liang Chen, Philip F LoCascio, Miriam L Land, Frank W Larimer, Loren J Hauser

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 950 KB

english, 2010

45

Complete genome sequence ofAllochromatium vinosumDSM 180T

Weissgerber, Thomas, Zigann, Renate, Bruce, David, Chang, Yun-juan, Detter, John C., Han, Cliff, Hauser, Loren, Jeffries, Cynthia D., Land, Miriam, Munk, A. Christine, Tapia, Roxanne, Dahl, Christiane

Journal:

Standards in Genomic Sciences

Year:

2011

Language:

english

File:

PDF, 1.56 MB

english, 2011

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